PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2388_p6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 462aa    MW: 52090.7 Da    PI: 8.7311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2388_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH59.36.8e-19298344455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRd+iN+++  L+el+P++     +K +Ka+iLe+A++Y+ksLq
  RrC2388_p6 298 VHNLSERRRRDKINERMKALQELIPHC-----TKTDKASILEEAIDYLKSLQ 344
                 6**************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-21292352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088819.257294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-17297348No hitNo description
SuperFamilySSF474596.15E-21297367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-16298344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-19300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MYCCAYRIII SLAGISFLFM ILSLSVCTKR KTREQVRGKR RFCCRGTSTL TSQRSDMEHQ  60
GWNFEENYNL SNNRRFIRPQ DDLVELLWRD GQVVQQSQTH RDQTQKQDYQ QETLRPNTFL  120
EDQETVSWIQ YPLDEDPFES EDLTSPFFST IDLLQRPASQ TAKHEASPKP PDQVMPPPKF  180
RLTDSSSEVR ELGKEQYSVV TVGPSHCSSN QSQTVLDGSL RAIDGRLYPN ASSSSGGSSG  240
CSFGKNNKDM ACVRSFTADR KRKHIIDTDE SVSQSDAIGN NKSSLRTGST RRSRAAEVHN  300
LSERRRRDKI NERMKALQEL IPHCTKTDKA SILEEAIDYL KSLQLQVQVM WMGSGMAAAA  360
AAPIMFPGVQ PPPPFIRQVQ SPVLLPRFPV MNRSAIQNNP GLVCQNPVQN QVLCDRFDRY  420
VGLFPQMQAA ASQPMDMLRF GSSAGQESQR TSAQTKTTDG TR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302307ERRRRD
2303308RRRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133562.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_009133563.10.0PREDICTED: transcription factor PIF4-like
SwissprotQ8W2F30.0PIF4_ARATH; Transcription factor PIF4
TrEMBLM4C7V50.0M4C7V5_BRARP; Uncharacterized protein
STRINGBra000283.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-172phytochrome interacting factor 4